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NUCLEIC ACIDS RESEARCH
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Overview
publication venue for
RNA-guided DNA base damage repair via DNA polymerase-mediated nick translation
. 51:166-181.
2023
The interaction between transport-segment DNA and topoisomerase IA-crystal structure of MtbTOP1 in complex with both G- and T-segments
. 51:349-364.
2023
AT-hook peptides bind the major and minor groove of AT-rich DNA duplexes
. 50:2431-2439.
2022
Negative DNA supercoiling makes protein-mediated looping deterministic and ergodic within the bacterial doubling time
. 49:11550-11559.
2021
The Cryo-EM structure of AAV2 Rep68 in complex with ssDNA reveals a malleable AAA
+
machine that can switch between oligomeric states
. 48:12983-12999.
2020
DNA and RNA editing without sequence limitation using the flap endonuclease 1 guided by hairpin DNA probes
. 48.
2020
Label-free profiling of DNA aptamer-small molecule binding using T5 exonuclease
. 48.
2020
A comprehensive rat transcriptome built from large scale RNA-seq-based annotation
. 48:8320-8331.
2020
Mechanistic insights from structure of
Mycobacterium smegmatis
topoisomerase I with ssDNA bound to both N- and C-terminal domains
. 48:4448-4462.
2020
coMethDMR: accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies with continuous phenotypes
. 47.
2019
In vitro isolation of class-specific oligonucleotide-based small-molecule receptors
. 47.
2019
RaftProt V2: understanding membrane microdomain function through lipid raft proteomes
. 47:D459-D463.
2019
The deoxyribose phosphate lyase of DNA polymerase beta suppresses a processive DNA synthesis to prevent trinucleotide repeat instability
. 46:8940-8952.
2018
Investigating mycobacterial topoisomerase I mechanism from the analysis of metal and DNA substrate interactions at the active site
. 46:7296-7308.
2018
Introducing structure-switching functionality into small-molecule-binding aptamers via nuclease-directed truncation
. 46.
2018
Protein-mediated loops in supercoiled DNA create large topological domains
. 46:4417-4424.
2018
In vitro isolation of small-molecule-binding aptamers with intrinsic dye-displacement functionality
. 46.
2018
Protein-mediated looping of DNA under tension requires supercoiling
. 46:2370-2379.
2018
Deacetylation of topoisomerase I is an important physiological function of E-coli CobB
. 45:5349-5358.
2017
MicroRNA-202 maintains spermatogonial stem cells by inhibiting cell cycle regulators and RNA binding proteins
. 45:4142-4157.
2017
RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals
. 44:6335-6349.
2016
Structural basis for suppression of hypernegative DNA supercoiling by E-coli topoisomerase I
. 43.
2015
AP endonuclease 1 prevents trinucleotide repeat expansion via a novel mechanism during base excision repair
. 43:5948-5960.
2015
A rapid and sensitive high-throughput screening method to identify compounds targeting protein-nucleic acids interactions
. 43.
2015
A 5 ', 8-cyclo-2 '-deoxypurine lesion induces trinucleotide repeat deletion via a unique lesion bypass by DNA polymerase beta
. 42:13749-13763.
2014
The Werner syndrome protein limits the error-prone 8-oxo-dG lesion bypass activity of human DNA polymerase kappa
. 42:12027-12040.
2014
Base excision repair of oxidative DNA damage coupled with removal of a CAG repeat hairpin attenuates trinucleotide repeat expansion
. 42:3675-3691.
2014
Human Rev1 polymerase disrupts G-quadruplex DNA
. 42:3272-3285.
2014
Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response
. 42:979-998.
2014
Trinucleotide repeat deletion via a unique hairpin bypass by DNA polymerase β and alternate flap cleavage by flap endonuclease 1
. 41:1684-1697.
2013
A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence
. 41:1-20.
2013
Selection is more intelligent than design: improving the affinity of a bivalent ligand through directed evolution
. 40:11777-11783.
2012
Residues of E-coli topoisomerase I conserved for interaction with a specific cytosine base to facilitate DNA cleavage
. 40:9233-9243.
2012
DNA linking number change induced by sequence-specific DNA-binding proteins
. 38:3643-3654.
2010
H2A.Bbd: an X-chromosome-encoded histone involved in mammalian spermiogenesis
. 38:1780-1789.
2010
Bacterial topoisomerase I as a target for discovery of antibacterial compounds
. 37:731-737.
2009
Inhibition of Mg(2+) binding and DNA religation by bacterial topoisomerase I via introduction of an additional positive charge into the active site region
. 36:4788-4796.
2008
Mutation adjacent to the active site tyrosine can enhance DNA cleavage and cell killing by the TOPRIM Gly to Ser mutant of bacterial topoisomerase I
. 36:1017-1025.
2008
Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by Escherichia coli DNA topoisomerase I
. 34:1785-1797.
2006
An RNA polymerase II construct synthesizes short-hairpin RNA with a quantitative indicator and mediates highly efficient RNAi
. 33:1-8.
2005
Energetics of echinomycin binding to DNA
. 31:6191-6197.
2003
DSSPcont: continuous secondary structure assignments for proteins
. 31:3293-3295.
2003
NLSdb: database of nuclear localization signals
. 31:397-399.
2003
PEP: Predictions for Entire Proteomes
. 31:410-413.
2003
IDENTIFICATION OF THE METALLOREGULATORY ELEMENT OF THE PLASMID-ENCODED ARSENICAL RESISTANCE OPERON
. 18:619-624.
1990
IMPROVED OLIGONUCLEOTIDE SITE-DIRECTED MUTAGENESIS USING M13 VECTORS
. 13:4431-4443.
1985
REGULATION OF THE ESCHERICHIA-COLI DNA TOPOISOMERASE-I GENE BY DNA SUPERCOILING
. 13:4751-4763.
1985
MECHANISTIC STUDY OF ESCHERICHIA-COLI DNA TOPOISOMERASE-I - CLEAVAGE OF OLIGONUCLEOTIDES
. 11:8691-8701.
1983
On the cooperative and noncooperative binding of ethidium to DNA
. 10:8211-8223.
1982
DROSOPHILA-TOPOISOMERASE-I - ISOLATION, PURIFICATION AND CHARACTERIZATION
. 10:6945-6955.
1982
Equilibrium binding of carcinogens and antitumor antibiotics to DNA: Site selectivity, cooperativity, allosterism
. 9:3175-3186.
1981
R17 COAT PROTEIN-BINDING SITE - A CONVENIENT REPORTER FOR IN-VITRO TRANSCRIPTION
1994
SEPPA 3.0-enhanced spatial epitope prediction enabling glycoprotein antigens.
2019
Re-usable DNA template for the polymerase chain reaction.
1997
Research
category
BIOCHEMISTRY & MOLECULAR BIOLOGY
Category
Identifiers
International Standard Serial Number (ISSN)
0305-1048
Electronic International Standard Serial Number (EISSN)
1362-4962
Other
journal abbreviation
NUCLEIC ACIDS RES