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BIOPHYSICAL JOURNAL
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publication venue for
A novel in vitro enzymatic system to synthesize supercoiled circular DNA molecules
. 123:81a.
2024
Computational studies of pressure-induced effects on DNA hairpin structures
. 123:495a.
2024
Effects of thymoquinone binding to DNA on DNA structure and activity
. 123:81a.
2024
Investigating the effects of CTD mutations as plasma membrane association of the Marburg virus protein VP40
. 123:448a.
2024
Investigation of HDAC7-MEF2A interactions using molecular simulations
. 123:136a.
2024
Structural elucidation of RXFP2 allosteric agonist (compound-6641) binding: A computational and experimental approach
. 123:98a.
2024
Targeting bacterial DNA gyrase and topoisomerase IV in vitro and in vivo by a newly identified quinazoline gyrase inhibitor
. 123:77a.
2024
Dynamics of the E. coli beta-Clamp Dimer Interface and Its Influence on DNA Loading
. 117:587-601.
2019
Mapping the Binding Trajectory of a Suicide Inhibitor in Human Indoleamine 2,3 Dioxygenase 1
. 116:481a.
2019
Self-Association and Conformational Stability of NAMPT Protein
. 112:56a.
2017
Thermal Denaturation and Domain Stability of NAMPT Protein
. 110:44a.
2016
Stochastic Model of Endothelial TRPV4 Calcium Sparklets: Effect of Bursting and Cooperativity on EDH
. 108:1566-1576.
2015
Probing Sequence and Topological Specificity in the Binding of Tetra(Methylpyridyl)Porphines to DNAs
. 106:275a.
2014
Single Protein Complexes Isomerization and Conformational Dynamics Using Trapped Ion Mobility Spectrometry: From MS to Seconds
. 106:259a.
2014
Multiple Factors Influence Calcium Synchronization in Arterial Vasomotion
. 102:211-220.
2012
Quantifying the Uncertainty of Spontaneous Ca2+ Oscillations in Astrocytes: Particulars of Alzheimer's Disease
. 101:554-564.
2011
Enantiospecificity of Chloroperoxidase-Catalyzed Epoxidation: Biased Molecular Dynamics Study of a Cis-beta-Methylstyrene/Chloroperoxidase-Compound I Complex
. 100:1066-1075.
2011
Conformational Dynamics in Dream Protein
. 100:86a.
2011
Conformational Dynamics in Neuroglobin
. 100:380a.
2011
Divide a Plasmid DNA Molecule into Two Independent Superhelical Domains by Sequence-Specific DNA-Binding Proteins: A DNA Superhelical Barrier Model
. 100:71a.
2011
Probing the Role of the Internal Disulfide Bond in Regulating Conformational Dynamics in Neuroglobin
. 99:L16-L18.
2010
Binding the mammalian high mobility group protein AT-hook 2 to AT-rich deoxyoligonucleotides: Enthalpy-entropy compensation
. 96:4144-4152.
2009
λ-repressor oligomerization kinetics at high concentrations using fluorescence correlation spectroscopy in zero-mode waveguides
. 88:2145-2153.
2005
Ionic blockade of the rat connexin40 gap junction channel by large tetraalkylammonium ions
. 81:3253-3274.
2001
Induced conformational states of amphipathic peptides in aqueous/lipid environments
. 68:351-359.
1995
Peptide binding domains determined through chemical modification of the side-chain functional groups
. 69:604-611.
1995
The binding at high base pair/bound drug ratios of small molecules to DNA: Role of side chains in the cooperative binding of intercalators to DNA
. 37.
1982
Hemoglobin-carbon monoxide binding rate. Low temperature magneto-optical detection of spin-tunneling
. 35:471-484.
1981
Exogenous ligand binding kinetics of globin X
2023
Exploring the dimer-dimer association of the ebolavirus matrix protein VP40 at the human plasma membrane
2023
Globin X: A target for surfactant-like molecules
2023
Interactions of Li+ ion with NCS1: A potential mechanism of Li+ neuroprotective action against psychotic disorders
2023
Role of the Trp169 Residue in Neuronal Calcium Sensor Dream
2021
Calculating the Binding Free Energy Difference between Conformational Changes of AT-Rich DNA Sequences
2020
Computational Study of the Molecular Details of Ebola Virus Matrix Protein VP40 and Human Sec24C Protein Interaction
2020
Cooperativity and Competition in the Binding of Heterocyclic Diamidines and RNA Polymerases to phiX174 DNA
2020
Domain Rigidity Modulates the Catalytic Activity of E. coli Type IA DNA Topoisomerases
2020
Ion Selective Pentameric Pore Formation by Ebola Virus Delta Peptide
2020
Lassa Virus Epitope-Allele Complexes Identified through Computational Modeling
2020
Mechanical Forces Alter Endothelin-1 Signaling: Comparative Ovine Models of Congenital Heart Disease
2020
Targeting Covalent Complex of Human Topoisomerase I with DNA
2020
Computational Study of Calcium Phosphate Mineralization in Extracellular Vesicles
2019
Dynamics of the Protein Interfaces of the Ebola Virus VP40 Structural Matrix Filament
2019
Molecular Basis of the Marburg Virus Protein VP24 Interactions with Human Keap1
2019
Molecular Dynamics Investigations of Enzyme Conformational Changes
2019
Nanopore-Nanoelectrode for Potential Sensing of Single Nanoparticle Collision Events
2019
The Effect of Lithium Binding on Secondary and Tertiary Structure, Hydrophobicity, Thermodynamics, and Interactions with Interacting Partners of Dream
2019
A Cylindrical Assembly Model and Dynamics of the Ebola Virus VP40
2018
Conformational Changes in Marburg Virus VP40 upon Plasma Membrane Association
2018
Covalent Complex Model of DNA Topoisomerase and DNA for Molecular Dynamics Simulation
2018
Direct Observation of Type IA Topoisomerase Gate Opening
2018
Influence of Conserved Structural Elements of the Proximal Pocket in HEME-Thiolate Enzymes on Oxygen Insertion Reactions
2018
Integration of Nanopore and Nanoelectrode for Single Entity Detection and Manipulation
2018
Role of Lys Residue at Position 87 of DREAM in Allosteric Regulation of DREAM's Interactions with K-V Channel
2018
Exploring Molecular Interactions between Escherichia coli RNA Polymerase and Topoisomerase I by Molecular Simulations
2017
Lead Tightly Associates to Neuronal Calcium Sensor (NCS) Protein Dream and Promotes Structural Changes Analogous to Calcium Bound Dream
2017
Pi(4,5)P-2 Clustering by the Ebola Virus Matrix Protein VP40
2017
Temperature Dependent Pair-Wise Amino Acid Structural Propensity in cc beta and Implications for alpha to beta Secondary Structural Conversion
2017
Interdomain Interactions and the Mechanism of Structural Transformation in RfaH
2016
On the Origin of the Extended Stoke's Shifts in Fluorescent Proteins
2016
Hydrogen Bond Flexibility and Water Dynamics in the Far Red Fluorescent Protein TagRFP675
2015
Probing Sequence and Topological Specificity in the Binding of Tetra(Methylpyridyl) Porphines to DNAs
2014
Single Protein Complexes Isomerization and Conformational Dynamics Using Trapped Ion Mobility Spectrometry: From MS to Seconds
2014
Temperature Dependence of the Protein-Chromophore Hydrogen Bond Dynamics in the Far-Red Fluorescent Protein Mplum
2014
Binding the mammalian high mobility group protein AT-hook 2 to AT-rich deoxyoligonucleotides: enthalpy-entropy compensation
2007
The Mammalian high mobility group protein AT-hook 2 (HMGA2) is a sequence-specific DNA-binding protein
2007
A model structure for the amino terminus of apolipoprotein B-100 reveals a potential link between atherogenic LDL and inflammation
2005
Energetics of mammalian high mobility group protein HMGA2 recognizing DNA minor groove
2005
Using restriction enzyme activity assays to investigate the binding of T7 RNA polymerase to DNAs
2004
The effects of alternate DNA structures on restriction enzyme and polymerase binding and activities with DNAs.
2002
Binding of small molecules to the single strand DNA analog of a high affinity carcinogen binding site.
2000
Effects of small molecule binding upon the activities of enzymes using a sequence possessing a (CG)(8) segment as a substrate.
1999
Probing high affinity carcinogen binding DNA sequences with porphyrin.
1997
The conformation of (CG) DNA segments regulates RNA polymerase activity.
1997
Molecular recognition of unusual DNA structures
1996
A MOLECULAR MECHANICS AND RESONANCE RAMAN INVESTIGATION OF THE CONSERVED NONPLANAR HEME DISTORTION IN CYTOCHROMES-C
1994
BREVETOXIN-3 (PBTX-3) AND ITS DERIVATIVES MODULATE SINGLE SODIUM-CHANNELS IN RAT SENSORY NEURONS
1994
THE INTERACTIONS OF METAL-BOUND INTERCALATORS WITH DNA
1994
WHY CHEMICAL CARCINOGENS BIND SELECTIVELY TO CERTAIN SEQUENCES
1994
RESTRICTION ENZYMES HAVE ALTERED CLEAVAGE RATES AT SITES NEAR CERTAIN SEQUENCES
1993
STRUCTURAL HETEROGENEITY OF OCTAETHYLPORPHYRINS PROBED BY RESONANCE RAMAN-SPECTROSCOPY
1993
STRUCTURE AND LIGAND-BINDING PROPERTIES OF NONPLANAR, MESOSUBSTITUTED NICKEL(II) OCTAETHYLPORPHYRINS - A POSSIBLE MODEL FOR COFACTOR F430
1993
STRUCTURAL FEATURES OF HIGH-AFFINITY CARCINOGEN BINDING-SITES
1990
STRUCTURAL STUDIES OF B-Z JUNCTIONS
1990
A NEW SPECTROSCOPY - SPIN-TUNNELING IN HEME-PROTEINS
1988
Alternating access switching in molecular dynamics simulations of PfMATE transporter
2022
Changes in the receptor-binding interface may cause immune evasion by the SARS-CoV-2 delta variant b.1.617.2
2022
Distinct mechanism of interactions between NCS1 and Tb
3+
/Eu
3+
2022
Mechanism of DREAM oligomerization kinetic study
2022
Sequence and topological specificity in the binding of thymoquinone to PHIX174RF DNA
2022
Structural characterization of folding of GbX with focus on intrinsic parameters influence protein stability
2022
Target bacterial DNA gyrase for new antibiotic discovery
2022
Conformational Structural Alteration of NCS1 Protein Through Pb2+ and Mn2+ Association
2021
Detection of Surface Charge Enhancement in Magnetoelectric Nanoparticles Induced by AC Magnetic Field Stimulation using Single Entity Approach
2021
Effects of G198R Mutation in the Ebola VP40 Matrix Protein: A Molecular Dynamics Study
2021
Fluorescent Analogue of Hexa-coordinate Globins to Monitor Accessibility of the Heme Pocket
2020
Impact of the Internal Disulfide Bond on the Ligand Migration in Globin X
2020
Modulating and Detecting the Dynamic Changes of Intermolecular Hydrogen Bonding in Plasmonic Molecular Junction
2020
Nanoimpact Based Single-Entity Detection of Proteins using a Nanopore-Nanoelectrode Nanopipette
2020
The Molecular Mechanism of Ca2+ Triggered DREAM Dimerization
2020
Mutation of Residues in CD Loop and Distal Pocket Impact Protein Stability of Human Neuroglobin
2019
Neuronal Calcium Sensor Dream Interactions with Insulinotropic Agent Repaglinide
2019
Surface-Enhanced Raman Spectroscopy (SERS)-Active Nanopipette for Single Cell Intracellular pH Sensing
2019
Tight Binding of Natural Polyphenols to the Intrinsically Disordered Mammalian High Mobility Group Protein At-Hook 2
2019
Determination of Effector Binding Affinities Using Photoacoustic Calorimetry
2018
Distinct Mechanism of Oxygen and Carbon Monoxide Interactions with HEME Protein
2018
Identification of Suramin as a Potent and Specific Inhibitor of the Mammalian High Mobility Group Protein at-Hook 2 (HMGA2)-DNA Interactions
2018
Non-symbiotic Hemoglobin Conformational Space Dependence on the HEME Coordination using NESI-TIMS-TOF MS
2018
Potential Disruption of Ebola Virus Matrix by Graphene Nano-Sheets
2018
Reactivity of Hexacoordinated HEME Proteins on Ultrafast Timescales
2018
Sequence Selectivity, Cooperativity and Competition in the Equilibrium Binding of Psoralens to DNA
2018
Binding of the Carcinogen 4-Nitroquinoline-1-Oxide to phiX174 DNA - Selectivity and Distortion
2017
Determination of Ligand Migration Pathways in Human Cytoglobin
2017
Effects of Azole Drugs on Conformational Dynamics and Energetics Associated with Diatomic Ligand Photorelease and Migration within Bacterial Flavohemoglobins
2017
Extracellular Membrane Potential Measurement of Single Living Cells with Scanning Ion Conductance Microscopy
2017
Protein-Mediated Loops in Supercoiled DNA Create Large Topological Domains
2017
Characterization of the Role of Individual EF-Hands in Dream in Modulating Conformational Dynamics, Oligomeric States, and Interaction with DNA
2016
Design and Construct a Type of Fluorescently Labeled Circular DNA Molecules to Study DNA Topology and Topoisomerases by Fluorescence Resonance Energy Transfer (FRET)
2016
Determination of Thermodynamic and Kinetic Parameters for Co Migration within Bacterial Flavohemoglobins of Ralstonia Eutropha and Staphylococcus Aureus
2016
Dynamic Network Analysis of Dream Protein Dimer Interface
2016
Effect of FIS on Transcription-Coupled DNA Supercoiling in E. coli
2016
HU Protein and DNA Supercoiling Dramatically Enhance Lac-Repressor-Mediated DNA Looping
2016
Role or Aromatic Residues in Dynamic Networks in DREAM/KChIP3
2016
Theoretical Simulation and Experimental Investigation for the Identification and Analysis of Biphasic Surface Plasmon Resonance Data
2016
Characterization of the Photophysical, Thermodynamic and Structural Properties of the Terbium(III)-KChIP3 Complex
2015
Identify the Binding Interface between Calsenilin and Presenilin 1 C-Terminal Fragment
2015
Molecular Interaction between Escherichia Coli Topoisomerase I and pBAD/Thio Supercoiled Plasmid DNA
2015
Role of Ionic Strength and the Bohr Effect in Modulating Thermodynamic Profiles Associated with Co Escape in Rice Non-Symbiotic Hemoglobin 1
2015
The N-Terminal Extension of KChIP3 is Responsible for KChIP3-Calmodulin Complex Formation
2015
Erratum: Switching of Swimming Modes in Magnetospirillium gryphiswaldense (Biophysical Journal (2014) 106 (37-46))
2014
Activating the Prokaryotic leu-500 Promoter by Transient, Dynamic DNA Supercoiling in Escherichia Coli
2014
Biochemical and Biophysical Properties of Positively Supercoiled DNA
2014
DNA i-MOTIF Probed by Photoacoustic Calorimetry
2014
Molecular Mechanism of Dream - Presenilin-1 Interactions
2014
Quartz Nanopipettes for the Study of Protein-Protein Interaction
2014
Study of the Dynamic and Thermodynamic Calcium Induced Transition in the Downstream Regulatory Element Antagonist Modulator (DREAM) using Photothermal Beam Deflection (PBD)
2014
Cytoglobin Interactions with Hydrophobic Probe 1,8-ANS
2013
Lactose Repressor Functions as a DNA Topological Barrier in Escherichia Coli Lactose Operon
2013
Modulation of the KV4.3-KchIP3 Interactions by Ca2+ and NS5806
2013
Spectroscopic Study Ca2+ Induced Changes in the Structure, Dynamics and Stability of Dream Protein and its Mechanism of DNA Interaction
2013
Time-Resolved Thermodynamics and Transient Kinetics for Oxygen Photorelease from Hemoglobin: Effector Complexes
2013
Ca2+ and Mg2+ Induced Conformational Changes in Downstream Regulatory Antagonist Modulator (DREAM) Measured by Extrinsic Hydrophobic Probes
2012
Impact of the Internal Disulfide Bond on Structural Dynamics in Vertebrates Hexacoordinate Hemeoglobins
2012
Mg2+/Ca2+ Induced Changes in Structure, Dynamics and Stability of Dream Protein
2012
Erratum: Enantiospecificity of chloroperoxidase-catalyzed epoxidation: Biased molecular dynamics study of a cis-b-methylstyrene/chloroperoxidase- Compound I complex (Biophysical Journal (2011) 104 (1066-1075))
2011
Characterization of Conformational Transitions in Dream Protein using Fluorescence Spectroscopy
2010
Evaluation of Photophysical Properties of Methylene Blue Incorporated within ZMOF Framework
2010
Structural Dynamics in Chloroperoxidase: A Photoacoustic Study
2010
The Role of the Internal Disulfide Bond in the Conformational Dynamics of Neuroglobin
2010
Characterization Of Ca2+ Photo-release From DM-nitrophen Using Photothermal Beam Deflection
2009
Conformatinal Dynamics Of Cytochrome c Encapsulated In AOT Reverse Micelles
2009
Dynamics And Energetics Associated With Ligand Photodissociation From Co Bound Chloroperoxidase
2009
Protein-Induced DNA Unwinding is An Intrinsic Feature of Certain Sequence-Specific DNA-Binding Proteins
2009
Research
category
BIOPHYSICS
Category
Identifiers
International Standard Serial Number (ISSN)
0006-3495
Electronic International Standard Serial Number (EISSN)
1542-0086
Other
journal abbreviation
BIOPHYS J
